Merge branch 'master' into rm_travis

Author: rflamary

.github/workflows/build_wheels.yml

@@ -0,0 +1,46 @@
+name: Build dist and wheels
+
+on:
+  release:
+
+jobs:
+  build_wheels:
+    name: ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-18.04]
+        # macosx-latest, windows-latest
+
+    steps:
+    - uses: actions/checkout@v1
+    - name: Set up Python 3.8
+      uses: actions/setup-python@v1
+      with:
+        python-version: 3.8
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -r requirements.txt
+        pip install -U "cython"
+
+    - name: Install cibuildwheel
+      run: |
+        python -m pip install cibuildwheel==1.3.0
+
+    - name: Install Visual C++ for Python 2.7
+      if: startsWith(matrix.os, 'windows')
+      run: |
+        choco install vcpython27 -f -y
+
+    - name: Build wheel
+      env:
+        CIBW_BEFORE_BUILD: "pip install numpy cython"
+      run: |
+        python -m cibuildwheel --output-dir wheelhouse
+
+    - uses: actions/upload-artifact@v1
+      with:
+        name: wheels
+        path: ./wheelhouse

.github/workflows/main.yml

@@ -1,3 +1,4 @@
+name: circleci-redirector
 on: [status]
 jobs:
   circleci_artifacts_redirector_job:

.github/workflows/pythonpackage.yml

@@ -1,4 +1,4 @@
-name: Test Package
+name: build
 
 on:
   push:
@@ -34,7 +34,7 @@ jobs:
         # stop the build if there are Python syntax errors or undefined names
         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics        
+        flake8 examples/ ot/ test/ --count --max-line-length=127 --statistics        
     - name: Install POT
       run: |
         pip install -e .

Makefile

@@ -58,6 +58,7 @@ release_test :
 
 rdoc :
 	pandoc --from=markdown --to=rst --output=docs/source/readme.rst README.md
+	sed -i 's,https://pythonot.github.io/auto_examples/,auto_examples/,g' docs/source/readme.rst 
 
 notebook :
 	ipython notebook --matplotlib=inline  --notebook-dir=notebooks/

README.md

@@ -12,3 +12,5 @@ coverage:
 comment:
   layout: "header, diff, sunburst, uncovered"
   behavior: default
+codecov:
+  token: 057953e4-d263-41c0-913c-5d45c0371df9

codecov.yml

@@ -3,3 +3,4 @@ sphinx_rtd_theme
 numpydoc
 memory_profiler
 pillow
+networkx

docs/requirements.txt

@@ -0,0 +1,14 @@
+sphinx_gallery
+numpydoc
+memory_profiler
+pillow
+networkx
+numpy
+scipy>=1.0
+cython
+matplotlib
+autograd
+pymanopt==0.2.4; python_version <'3'
+pymanopt; python_version >= '3'
+cvxopt
+scikit-learn

docs/requirements_rtd.txt

@@ -0,0 +1,6 @@
+from recommonmark.parser import CommonMarkParser
+
+source_parsers = {'.md': CommonMarkParser}
+
+source_suffix = ['.md']
+master_doc = 'index'