adding the new *pps to their appropriate makefile locations

Author: guilhermesena1

Makefile.am

@@ -25,13 +25,14 @@ lib_LIBRARIES = libsmithlab_cpp.a
 libsmithlab_cpp_a_SOURCES = GenomicRegion.cpp MappedRead.cpp		\
 OptionParser.cpp QualityScore.cpp bisulfite_utils.cpp			\
 chromosome_utils.cpp sim_utils.cpp smithlab_os.cpp smithlab_utils.cpp	\
-zlib_wrapper.cpp dna_four_bit.cpp
+zlib_wrapper.cpp dna_four_bit.cpp cigar_utils.cpp
 
 if ENABLE_HTS
-libsmithlab_cpp_a_SOURCES += htslib_wrapper_deprecated.cpp
+libsmithlab_cpp_a_SOURCES += htslib_wrapper_deprecated.cpp sam_record.cpp
 endif
 
 include_HEADERS = GenomicRegion.hpp MappedRead.hpp OptionParser.hpp	\
 QualityScore.hpp bisulfite_utils.hpp chromosome_utils.hpp		\
 sim_utils.hpp smithlab_os.hpp smithlab_utils.hpp zlib_wrapper.hpp	\
-dna_four_bit.hpp cigar_utils.hpp htslib_wrapper_deprecated.hpp
+dna_four_bit.hpp cigar_utils.hpp htslib_wrapper_deprecated.hpp \
+sam_record.hpp