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3357fa3
suppress Zarr V3 numcodecs warnings
tasansal Dec 18, 2025
2001434
add statistical properties (mean, variance, std) to stats schema
tasansal Dec 18, 2025
824bbe3
monkey-patch ZFP codec to fix bug temporarily
tasansal Dec 18, 2025
816fe3e
add ZFP-based access pattern optimization utilities with Dask support
tasansal Dec 18, 2025
aaadd14
refactor ZFP monkey patch to handle optional Dask dependency
tasansal Dec 18, 2025
3e09631
refactor Dask integration to simplify ZFP plugin setup and import han…
tasansal Dec 18, 2025
aa1848b
refactor Dask integration to simplify ZFP plugin setup and import han…
tasansal Dec 18, 2025
c402b95
ZFP plugin import by switching to local scoped import
tasansal Dec 18, 2025
e665514
refactor access pattern logic to rename `access_patterns` to `optimiz…
tasansal Dec 18, 2025
e8a718c
fix syntax error on warning ignore
tasansal Dec 18, 2025
402665f
update rechunking tutorial to v1
tasansal Dec 18, 2025
2c2283b
lint
tasansal Dec 18, 2025
f9f06a7
remove TYPE_CHECKING import and adjust ZfpQuality import
tasansal Dec 18, 2025
efcc1d1
add unit tests for optimize_access_pattern module
tasansal Dec 18, 2025
d846db5
set pytest fixtures to class scope and mock environment variables in …
tasansal Dec 18, 2025
c67dd42
add unit test for user-provided Dask client in optimize_access_patterns
tasansal Dec 18, 2025
16e44da
update test cases to have a slightly different chunksize
tasansal Dec 18, 2025
f5c819e
add 'distributed' package to test dependencies in noxfile
tasansal Dec 18, 2025
64a3468
add 'zfpy' package to test dependencies in noxfile
tasansal Dec 18, 2025
cfbee24
refactor: adjust zfpy codec handling and refactor related tests
tasansal Dec 19, 2025
59ced7d
Update src/mdio/optimize/common.py
tasansal Dec 19, 2025
5156867
update test environment variable values in optimize_access_pattern un…
tasansal Dec 19, 2025
309f01a
nit
tasansal Dec 19, 2025
c88faff
refactor: replace ZfpQuality with compressor in optimize_access_patte…
tasansal Dec 19, 2025
64cfa7d
patch: configure zarr concurrency and clarify docstring on Blosc thre…
tasansal Dec 19, 2025
4905708
fix: ensure stats check is conditional on compressor in access patterns
tasansal Dec 19, 2025
28a28d9
Revert "patch: configure zarr concurrency and clarify docstring on Bl…
tasansal Dec 19, 2025
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7 changes: 7 additions & 0 deletions docs/api_reference.md
Original file line number Diff line number Diff line change
Expand Up @@ -40,3 +40,10 @@ and
.. automodule:: mdio.core.dimension
:members:
```

## Optimization

```{eval-rst}
.. automodule:: mdio.optimize.access_pattern
:members:
```
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